Course code: BMB502417
Course coordinator: dr.ir. Koen Vincken
Credits: 5 EC
Lecturers: dr.ir. Koen Vincken, dr.ir. Edwin Bennink
Teaching assistants: Siebert Elhorst and Antonio di Meglio
Course description
In the area of medical imaging, it is necessary to create computer programs to process and analyse image data. This course deals with both the theoretical knowledge and practical skills of working with (large) image datasets.
You will learn the basics of the file structures to store medical image data, and how to write source code and create a computer program to process medical images efficiently. This includes debugging, problem solving and maintenance of software.
The course includes algorithms and data structures used in medical image analysis. Modern programming techniques are used, such as Python and C++, while paying attention to efficient computer instructions and memory usage.
This course follows the “flipped classroom” principle: courses are a combination of online material and exercises, with practical sessions on Friday under supervision at the UMC Utrecht.
Learning goals
Upon completion of the course the student
- Is able to participate in a multidisciplinary research environment
- is able to create a computer program using Python
- can debug source code and fix issues
- has a basic understanding on how source code affects computer execution and memory
- has knowledge on algorithms and data structures for medical image processing
Examination
- Computer assignments: 40%
- Written exam: 60%
The weights indicated above are applied to calculate the final mark. To pass the course the final mark must be an unrounded 5.5 or higher.
Literature/study material used: Slides, code and online material will be provided during the course.
Date: Every academic year on Friday from September to November. Scroll down for detailed schedule.
Mandatory for students in Master’s programme: yes
Optional for students in other GSLS Master’s programmes: yes
Registration
Please check the registration procedure for the enrollment deadlines. First year Medical Imaging students will be automatically registered upon entering the Master’s programme.
Other UU and TU/e MI-track students can register for this course via Osiris Student.
Students from outside the UU or TU/e MI-track can register for this course by sending an email to mix @umcutrecht.nl. Please include your name, student number, Master’s programme and the course code.
Schedule
For directions to the lecture rooms go to Route.
PLEASE NOTE: in case of any differences this schedule overrules the MyTimetable schedule